This repository contains the functionality to standardize the National checklists and red lists for European butterflies to a Darwin Core checklist that can be harvested by GBIF.
The repository also includes the script to integrate red lists, calculate weighted red list values, and create the tables and figures for Maes et al. (2019).
source data (maintained as a Google Spreadsheet) → Darwin Core mapping script → generated Darwin Core files
source data → analysis script → tables and figures for Maes et al. (2019)
The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED should not be edited manually.
├── README.md : Description of this repository
├── LICENSE : Repository license
├── eurobutt-checklist.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── data
│ ├── raw : Source data from Google Spreadsheet, input for scripts GENERATED
│ ├── interim : Interim data created for analysis GENERATED
│ └── processed : Darwin Core output of mapping script GENERATED
│
├── docs : Repository website GENERATED
│
├── reports : Figures and tables as output of analysis GENERATED
│
└── src
├── dwc_mapping.Rmd : Darwin Core mapping script
├── integrating_rl.Rmd : Analysis script to integrate red lists
├── _site.yml : Settings to build website in docs/
└── index.Rmd : Template for website homepagedwc_mapping.Rmd R Markdown file in RStudioRun > Run All to generate the processed dataBuild > Build website to generate the processed data and build the website in docs/