Package index • n2kanalysis

All functions

Spde-class: The spde class
combine(): Combine multiple n2k objects
connect_inbo_s3(): Set environment variables for INBO S3 bucket
delete_model(): Delete an n2kModel object
display(): Display a message.
extract(): Extract the relevant coefficients
fit_every_model(): Fit the model to the analysis files
fit_model(): Fit an n2kModel object
get_analysis_date(): Get the analysis date of an n2kModel object
get_analysis_version(): Get an analysis version
get_anomaly(): Get the anomalies from a model
get_data(): Get the data of an n2kModel object
get_datafield_id(): Get the data field id
get_file_fingerprint(): Get the file fingerprint of an n2kModel object
get_formula(): Get the formula of an n2kModel object
get_location_group_id(): Get the location group id of an n2kModel object
get_model(): Get the model of a n2kModel object
get_model_parameter(): Add the model parameters from a model
get_model_type(): Get the model type of an n2kModel object
get_parents(): Get the object of the parent analyses of an n2kModel object
get_result(): Add the results from an analysis
get_scheme_id(): Get the scheme_id of an n2kModel object
get_seed(): Get the seed of an n2kModel object
get_species_group_id(): Get the species group id of an n2kModel object
get_status_fingerprint(): Get the status fingerprint of an n2kModel object
inla_inverse(): Calculate the mean and 95\ marginal
make_a(): Convert an Spde object to a A object
manifest_yaml_to_bash(): Convert a manifest yaml file into a bash script
mark_obsolete_dataset(): Find and mark obsolete datasets
moving_average(): Calculate moving trend coefficients
moving_difference(): Calculate coefficients for a moving difference
moving_trend(): Calculate moving trend coefficients
n2kAggregate-class: The n2kAggregate class
n2kAnalysisMetadata-class: The n2kAnalysisMetadata class
n2kAnalysisVersion-class: The n2kAnalysisVersion class
n2kAnomaly-class: The n2kAnomaly class
n2kComposite-class: The n2kComposite class
n2kContrast-class: The n2kContrast class
n2kHurdleImputed-class: The n2kHurdleImputed class
n2kImport-class: The n2kImport class
n2kInla-class: The n2kInla class
n2kInlaComparison-class: The n2kInlaComparison class
n2kManifest-class: The n2kManifest class
n2kModel-class: The n2kModel class
n2kModelImputed-class: The n2kModelImputed class
n2kParameter-class: The n2kParameter class
n2kResult-class: The n2kResult class
n2kSpde-class: The n2kSpde class
n2k_aggregate(): Create an n2kAggregate object
n2k_composite(): Create an n2kComposite object
n2k_hurdle_imputed(): Create an n2kHurdleImputed object
n2k_import(): Create an n2kImport object
n2k_inla(): Create an n2kInla object
n2k_inla_comparison(): Create an n2kInlaComparison object
n2k_manifest(): Create an n2kManifest object
n2k_model_imputed(): Create an n2kModelImputed object
n2k_spde(): Create an n2kSpde object
order_manifest(): Convert a manifest in vector of analysis fingerprints
parent_status(): Get the parent status of an n2kModel
`parent_status<-`(): Overwrite the status of an n2kAnalysisMetadata
read_manifest(): Read a n2kManifest object
read_model(): Read an n2kModel object
read_result(): Read an n2kResult object
result_estimate(): Aggregate all results estimates in a single dataframe
result_metadata(): Aggregate all results meta data in a single dataframe
select_factor_count_non_zero(): Select data based on the number of presences per category
select_factor_threshold(): Select the observations based on the average of a factor
select_observed_range(): Limit the observation to the range in which the species is present
session_package(): Convert a sessionInfo() to a data.frame of packages
spde(): Create an Spde object
spde2matern(): Convert an Spde object to a matern object
spde2matern(<Spde>) spde2mesh(): Convert an Spde object to a mesh object
status(): Get the status of an n2kModel
`status<-`(): Overwrite the status of an n2kAnalysisMetadata
store_manifest(): Store an n2kManifest object
store_manifest_yaml(): Store a Docker configuration
store_model(): Store an n2kModel object
union(): Make a union of AnalysisVersions
validObject(<character>): Get the validity of objects in files