Package index • n2kanalysis

All functions

Spde-class: The spde class

combine(): Combine multiple n2k objects

delete_model(): Delete an n2kModel object

display(): Display a message.

extract(): Extract the relevant coefficients

fit_every_model(): Fit the model to the analysis files

fit_model(): Fit an n2kModel object

get_analysis_date(): Get the analysis date of an n2kModel object

get_analysis_version(): Get an analysis version

get_anomaly(): Get the anomalies from a model

get_data(): Get the data of an n2kModel object

get_datafield_id(): Get the data field id

get_file_fingerprint(): Get the file fingerprint of an n2kModel object

get_formula(): Get the formula of an n2kModel object

get_location_group_id(): Get the location group id of an n2kModel object

get_model(): Get the model of a n2kModel object

get_model_parameter(): Add the model parameters from a model

get_model_type(): Get the model type of an n2kModel object

get_parents(): Get the object of the parent analyses of an n2kModel object

get_result(): Add the results from an analysis

get_scheme_id(): Get the scheme_id of an n2kModel object

get_seed(): Get the seed of an n2kModel object

get_species_group_id(): Get the species group id of an n2kModel object

get_status_fingerprint(): Get the status fingerprint of an n2kModel object

inla_inverse(): Calculate the mean and 95\ marginal

make_a(): Convert an Spde object to a A object

manifest_yaml_to_bash(): Convert a manifest yaml file into a bash script

mark_obsolete_dataset(): Find and mark obsolete datasets

moving_average(): Calculate moving trend coefficients

moving_difference(): Calculate coefficients for a moving difference

moving_trend(): Calculate moving trend coefficients

n2kAggregate-class: The n2kAggregate class

n2kAnalysisMetadata-class: The n2kAnalysisMetadata class

n2kAnalysisVersion-class: The n2kAnalysisVersion class

n2kAnomaly-class: The n2kAnomaly class

n2kComposite-class: The n2kComposite class

n2kContrast-class: The n2kContrast class

n2kHurdleImputed-class: The n2kHurdleImputed class

n2kImport-class: The n2kImport class

n2kInla-class: The n2kInla class

n2kInlaComparison-class: The n2kInlaComparison class

n2kManifest-class: The n2kManifest class

n2kModel-class: The n2kModel class

n2kModelImputed-class: The n2kModelImputed class

n2kParameter-class: The n2kParameter class

n2kResult-class: The n2kResult class

n2kSpde-class: The n2kSpde class

n2k_aggregate(): Create an n2kAggregate object

n2k_composite(): Create an n2kComposite object

n2k_hurdle_imputed(): Create an n2kHurdleImputed object

n2k_import(): Create an n2kImport object

n2k_inla(): Create an n2kInla object

n2k_inla_comparison(): Create an n2kInlaComparison object

n2k_manifest(): Create an n2kManifest object

n2k_model_imputed(): Create an n2kModelImputed object

n2k_spde(): Create an n2kSpde object

order_manifest(): Convert a manifest in vector of analysis fingerprints

parent_status(): Get the parent status of an n2kModel

`parent_status<-`(): Overwrite the status of an n2kAnalysisMetadata

read_manifest(): Read a n2kManifest object

read_model(): Read an n2kModel object

read_result(): Read an n2kResult object

result_estimate(): Aggregate all results estimates in a single dataframe

result_metadata(): Aggregate all results meta data in a single dataframe

select_factor_count_strictly_positive(): Select data based on the number of presences per category

select_factor_threshold(): Select the observations based on the average of a factor

select_observed_range(): Limit the observation to the range in which the species is present

session_package(): Convert a sessionInfo() to a data.frame of packages

spde(): Create an Spde object

spde2matern(): Convert an Spde object to a matern object

spde2matern(<Spde>) spde2mesh(): Convert an Spde object to a mesh object

status(): Get the status of an n2kModel

`status<-`(): Overwrite the status of an n2kAnalysisMetadata

store_manifest(): Store an n2kManifest object

store_manifest_yaml(): Store a Docker configuration

store_model(): Store an n2kModel object

union(): Make a union of AnalysisVersions

validObject(<character>): Get the validity of objects in files