Function reference • n2kanalysis

All functions
`combine()`	Combine multiple n2k objects
`delete_model()`	Delete an `n2kModel` object
`display()`	Display a message.
`extract()`	Extract the relevant coefficients
`fit_every_model()`	Fit the model to the analysis files
`fit_model()`	Fit an `n2kModel` object
`get_analysis_date()`	Get the analysis date of an `n2kModel` object
`get_analysis_version()`	Get an analysis version
`get_anomaly()`	Get the anomalies from a model
`get_data()`	Get the data of an `n2kModel` object
`get_file_fingerprint()`	Get the file fingerprint of an `n2kModel` object
`get_formula()`	Get the formula of an `n2kModel` object
`get_location_group_id()`	Get the location group id of an `n2kModel` object
`get_model()`	Get the model of a `n2kModel` object
`get_model_parameter()`	Add the model parameters from a model
`get_model_type()`	Get the model type of an `n2kModel` object
`get_parents()`	Get the object of the parent analyses of an `n2kModel` object
`get_result()`	Add the results from an analysis
`get_scheme_id()`	Get the `scheme_id` of an `n2kModel` object
`get_seed()`	Get the seed of an `n2kModel` object
`get_species_group_id()`	Get the species group id of an `n2kModel` object
`get_status_fingerprint()`	Get the status fingerprint of an `n2kModel` object
`inla_inverse()`	Calculate the mean and 95\ marginal
`manifest_yaml_to_bash()`	Convert a manifest yaml file into a bash script
`mark_obsolete_dataset()`	Find and mark obsolete datasets
`n2kAggregate-class`	The `n2kAggregate` class
`n2kAnalysisMetadata-class`	The `n2kAnalysisMetadata` class
`n2kAnalysisVersion-class`	The `n2kAnalysisVersion` class
`n2kAnomaly-class`	The `n2kAnomaly` class
`n2kComposite-class`	The `n2kComposite` class
`n2kContrast-class`	The `n2kContrast` class
`n2kHurdleImputed-class`	The `n2kHurdleImputed` class
`n2kImport-class`	The `n2kImport` class
`n2kInla-class`	The `n2kInla` class
`n2kInlaComparison-class`	The `n2kInlaComparison` class
`n2kManifest-class`	The `n2kManifest` class
`n2kModel-class`	The `n2kModel` class
`n2kModelImputed-class`	The `n2kModelImputed` class
`n2kParameter-class`	The `n2kParameter` class
`n2kResult-class`	The `n2kResult` class
`n2k_aggregate()`	Create an `n2kAggregate` object
`n2k_composite()`	Create an `n2kComposite` object
`n2k_hurdle_imputed()`	Create an `n2kHurdleImputed` object
`n2k_import()`	Create an `n2kImport` object
`n2k_inla()`	Create an `n2kInla` object
`n2k_inla_comparison()`	Create an `n2kInlaComparison` object
`n2k_manifest()`	Create an `n2kManifest` object
`n2k_model_imputed()`	Create an `n2kModelImputed` object
`parent_status()`	Get the parent status of an `n2kModel`
`parent_status<-`()	Overwrite the status of an `n2kAnalysisMetadata`
`read_manifest()`	Read a `n2kManifest` object
`read_model()`	Read an `n2kModel` object
`read_result()`	Read an `n2kResult` object
`result_estimate()`	Aggregate all results estimates in a single dataframe
`result_metadata()`	Aggregate all results meta data in a single dataframe
`select_factor_count_strictly_positive()`	Select data based on the number of presences per category
`select_factor_threshold()`	Select the observations based on the average of a factor
`select_observed_range()`	Limit the observation to the range in which the species is present
`session_package()`	Convert a `sessionInfo()` to a data.frame of packages
`status()`	Get the status of an `n2kModel`
`status<-`()	Overwrite the status of an `n2kAnalysisMetadata`
`store_manifest()`	Store an `n2kManifest` object
`store_manifest_yaml()`	Store a Docker configuration
`store_model()`	Store an `n2kModel` object
`union()`	Make a union of `AnalysisVersions`
`validObject(<character>)`	Get the validity of objects in files

Reference

All functions