Convert a manifest yaml file into a bash script

Usage

manifest_yaml_to_bash(
  base,
  project,
  hash,
  shutdown = FALSE,
  split = 1,
  status = c("new", "waiting"),
  limit = FALSE,
  timeout = 4
)

# S4 method for class 's3_bucket'
manifest_yaml_to_bash(
  base,
  project,
  hash,
  shutdown = FALSE,
  split = 1,
  status = c("new", "waiting"),
  limit = FALSE,
  timeout = 4
)

# S4 method for class 'character'
manifest_yaml_to_bash(
  base,
  project,
  hash,
  shutdown = FALSE,
  split = 1,
  status = c("new", "waiting"),
  limit = FALSE,
  timeout = 4
)

Arguments

base: the base location to store the manifest
project: will be a relative path within the base location
hash: Fingerprint of the manifest yamlfile.
shutdown: Append a shutdown command at the end of the script. Defaults to FALSE.
split: Number of scripts over which to splits the analyses. Default to 1.
status: A vector with status levels naming the levels which should be calculated. Defaults to c("new", "waiting").
limit: Limit bandwidth and CPU usage. Defaults to FALSE.
timeout: number of hours to time out the docker container. Defaults to 4.