Category: r

Get species checklist data from GBIF with rgbif
How to use rgbif function `name_usage()` to get species checklist data from GBIF as well as some other rgbif tips.

rgbif: Multiple values
📦 R package vignette.

Using WFS services in R
How to use WFS (vectors/features) GIS services within R scripts

Using WMS services in R
How to use WMS (raster) GIS services within R scripts

checklist: Setting up the integration between GitHub, Zenodo and ORCID
📦 R package vignette.

frictionless: Introduction to frictionless
📦 R package vignette.

rgbif: Citing GBIF mediated data
📦 R package vignette.

rgbif: Downloading occurrence data from GBIF
📦 R package vignette.

rgbif: Downloading species lists from GBIF
📦 R package vignette.

rgbif: Set up your GBIF username and password
📦 R package vignette.

rgbif: Working with taxonomic names
📦 R package vignette.

wateRinfo: Introduction to downloading time series data from waterinfo.be
📦 R package vignette.

etn: Explore acoustic telemetry data
📦 R package vignette.

Coordinate operations and maps in R
This tutorial shows how to do coordinate transformations and conversions in R. It also demonstrates how spatial data can be mapped with ggplot2 and …

Citations in R Markdown
How to use Rstudio's citation tools to cite publications and create bibliographies

Goodbye PROJ.4! How to specify a coordinate reference system in R?
Current good practice in specifying a CRS in R

Updating the renv environment of an R project
Updating R and packages in an renv environment

n2khab: Working with geospatial data sources of habitat (sub)types and RIBs
📦 R package vignette.

checklist: Philosophy of the checklist package
📦 R package vignette.

checklist: Setting up checklist
📦 R package vignette.

(Down)load KNMI, KMI or MOWHIC data using the inborutils package
Link to article in the inborutils package

Statistics courses @ INBO!
Links to course material of statistics courses taught at INBO (only accessible for INBO employees)

watina: Getting started with watina: connecting and selecting locations
📦 R package vignette.

gwloggeR: Air pressure
📦 R package vignette.

gwloggeR: Air pressure: drift
📦 R package vignette.

gwloggeR: Hydrostatic pressure
📦 R package vignette.

gwloggeR: Introduction to gwloggeR
📦 R package vignette.

Software by INBO: packages for environmentalists and ecologists!

Tutorial setup_codingclub_session()
Tutorial on how to use setup_codingclub_session() to load data and scripts to use during coding clubs.

Read data from Google sheets
Extracting data directly from Google spreadsheets

How to use open raster file formats in R: GeoTIFF & GeoPackage
A simple tutorial to demonstrate the use of GeoTIFF and *.gpkg files in R

Transforming spatial objects
Changing between coordinate reference systems with the R package sp

inbodb: How to retrieve data from the INBOVEG database
📦 R package vignette.

'Zoom in' on `ggplot2` figures
Learn the difference between zooming in with scales and coordinates.

Mixed model formulation of a paired ttest
Learn some insights about mixed models based on a simple example

Same variable in fixed and random effects
Learn what the effect is of having the same variable in the fixed and random part of a mixed model.

Spatially correlated random effects with INLA
A quick and dirty illustration of how spatially correlated random effects can be fit with INLA

Zeroinflation
Various ways in which zeroinflation can be detected and handled.

effectclass: Standardised classification of effects based on their uncertainty
📦 R package vignette.

n2khab: Demonstrating package & data setup and handling of sf objects: a case with read_soilmap()
📦 R package vignette.

How to use open vector file formats in R: GeoPackage & GeoJSON
A simple tutorial to demonstrate the use of *.gpkg and *.geojson files in R

Meet some popular open geospatial standards!
A short introduction to the powerful GeoPackage, GeoJSON and GeoTIFF standards

Classification and visualisation of estimates and their uncertainty
Slides of a workshop around uncertainty

effectclass: Visualising effects
📦 R package vignette.

watina: Using hydrochemical data to characterize and select locations
📦 R package vignette.

watina: Using XG3 values to characterize and select locations
📦 R package vignette.

Match scientific names with the GBIF Backbone Taxonomy
How to use inborutils function gbif_species_name_match() to match a list of scientific names against the GBIF backbone taxonomy.

n2khab: Where to store the N2KHAB input data sources
📦 R package vignette.

inborutils: GBIF scientific name matching
📦 R package vignette.

How to make spatial joins (point in polygon)?
Various ways to make a spatial join between GIS point data and polygon data

Applying the INBO corporate identity to bookdown documents
Slides, code and data used during the INBOmd workshop

n2khab: Using the GRTS data sources
📦 R package vignette.

bioRad: Introduction to bioRad
📦 R package vignette.

n2khab: Reference lists and using them
📦 R package vignette.

R voor beginners
Handleiding, code en data ter ondersteuning van de 'R voor beginners' workshop

INLA workshops
Slides, code and data used during the INLA workshop

inlatools: Checking the distribution and dispersion of a model
📦 R package vignette.

inlatools: Getting a grasp on the random walk hyperparameter
📦 R package vignette.

inlatools: Setting a prior for the random intercept variance and fixed effects
📦 R package vignette.

inborutils: (Down)load data from external partners
📦 R package vignette.

INBOmd: Introduction to INBOmd
📦 R package vignette.

Headers and navigation in R code
Provide structure inside an R script using sections

Let's create an interactive map!
Creating interactive maps with leaflet

Using `%>%` pipes in R
Using the %>% pipe functionality in R scripts

Data wrangling with tidyverse
Some introductionary information about tidyverse

inborutils: Check coordinate system
📦 R package vignette.

wateRinfo: Define the date period to download
📦 R package vignette.

wateRinfo: Download time series from multiple stations/variables
📦 R package vignette.

Reading large data files in R
Handling large text files in R

Read data from INBO databases (SQL Server) with R
Database access using R