check table RegSpecies from Fieldmap database for inconsistencies

This function retrieves the important fields of tables HeightClass and RegSpecies (of all periods) from the given database and checks for missing data or wrong input.

check_data_regspecies(database, forest_reserve = "all")

Arguments

database

name of Fieldmap/Access database (with specific Fieldmap structure) including path

forest_reserve

name of forest reserve for which the records in the database should be checked (defaults to "all")

Value

Dataframe with inconsistent data with ID's and additional columns aberrant_field (which column is wrong) and anomaly (what is wrong with the input)

Examples

library(forrescalc)
# (add path to your own fieldmap database here)
path_to_fieldmapdb <-
  system.file("example/database/mdb_bosres.sqlite", package = "forrescalc")
check_data_regspecies(path_to_fieldmapdb)
#> # A tibble: 6 × 8
#>   plot_id subplot_id heightclass_id period regspecies_id aberrant_field anomaly
#>     <int>      <int>          <int>  <int>         <int> <chr>          <chr>  
#> 1     204          1              2      3             1 number_class   missing
#> 2     204          1              2      3             2 number_class   missing
#> 3     204          1              2      3             3 number_class   missing
#> 4     204          1              2      3             4 number_class   missing
#> 5     204          1              2      3             5 number_class   missing
#> 6     204          1              2      3             6 number_class   missing
#> # ℹ 1 more variable: aberrant_value <dbl>
check_data_regspecies(path_to_fieldmapdb, forest_reserve = "Everzwijnbad")
#> # A tibble: 0 × 8
#> # ℹ 8 variables: plot_id <int>, subplot_id <int>, heightclass_id <int>,
#> #   period <int>, regspecies_id <int>, aberrant_field <chr>, anomaly <lgl>,
#> #   aberrant_value <dbl>