DVW target species list

Rationale

This repository contains the functionality to standardize the data of the target specie list as provided by De Vlaamse Waterweg (DVW) to a Darwin Core Archive that can be harvested by GBIF.

Workflow

source data → Darwin Core mapping script → generated Darwin Core files

Published dataset

Dataset on the IPT (to be done)
Dataset on GBIF (to be done)

Repo structure

The repository structure is based on Cookiecutter Data Science and the Checklist recipe. Files and directories indicated with GENERATED should not be edited manually.

├── README.md              : Description of this repository
├── LICENSE                : Repository license
├── dvw-target-list.Rproj  : RStudio project file
├── .gitignore             : Files and directories to be ignored by git
│
├── src
│   ├── dwc_mapping.Rmd    : Darwin Core mapping script
│   ├── _site.yml          : Settings to build website in docs/
│   └── index.Rmd          : Template for website homepage
│
├── docs                   : Repository website GENERATED
│
└── data
    ├── raw                : Source data, input for mapping script
    └── processed          : Darwin Core output of mapping script GENERATED

Installation

Click on Use this template to create a new repository on your account
Open the RStudio project file
Open the dwc_mapping.Rmd R Markdown file in RStudio
Install any required packages
Click Run > Run All to generate the processed data
Alternatively, click Build > Build website to generate the processed data and build the website in docs/ (advanced)

Contributors

List of contributors

License

MIT License for the code and documentation in this repository. The included data is released under another license.

Vlaamse Waterweg target species list